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Impact Analysis
233,601
Total Citations
206,029
Unique Citing Papers
15
Citing Fields
20
Citing Institutions
5,284
Linked Publications
1772 canonical · 2809 mentions · 703 papers
205,687
Papers Depending on Software
3079.0M
Package Downloads
139,671
Dependent Packages
95,809
External Users
Non-contributor participants
Publications
Total Citations233,601
Median Citations5
Portfolio FWCI11.89
Citation Trajectory
↗506
12
807
13
1232
14
1750
15
2387
16
3681
17
5803
18
9035
19
15178
20
22333
21
27935
22
35617
23
45185
24
48158
25
13059
26
Repositories
Paper Connections5,284
Papers Depending on Software205,687
Package Downloads3079.0M
Dependent Packages139,671
Dependent Repos2,006,584
Adoption Signals
Issues from Users188,652
PRs from Users306,431
External Unique Users95,809
Publications
11.89FWCI (1089 papers)
Percentile Distribution
Top 1% (619)Top 10% (374)No data (609)
Citation Distribution
0
453
1-5
390
6-20
285
21-50
194
51-100
93
101-500
125
500+
62
Top Papers
| Title | Cit. ▼ | FWCI | Pctl |
|---|---|---|---|
| Matplotlib: A 2D Graphics Environment | 37,869 | 30.17 | 100th |
| VSEARCH: a versatile open source tool for metagenomics | 10,849 | 250.50 | 100th |
| LAMMPS - a flexible simulation tool for particle-based materials modeling at the atomic, meso, and continuum scales | 10,466 | 464.69 | 100th |
| MultiQC: summarize analysis results for multiple tools and samples in a single report | 10,132 | 96.27 | 100th |
| <scp>UCSF ChimeraX</scp>: Structure visualization for researchers, educators, and developers | 9,675 | 966.36 | 100th |
| 3D Slicer as an image computing platform for the Quantitative Imaging Network | 8,526 | 74.05 | 100th |
| The MR-Base platform supports systematic causal inference across the human phenome | 8,306 | 260.53 | 100th |
| scikit-image: image processing in Python | 6,689 | 89.08 | 100th |
| Julia: A Fresh Approach to Numerical Computing | 6,011 | 337.62 | 100th |
| PsychoPy2: Experiments in behavior made easy | 5,220 | 216.69 | 100th |
Repositories
Top Repos by Paper Connections
| Repository | Citing | Mention | Total ▼ |
|---|---|---|---|
| sigmavirus24/github3 | 0 | 82 | 82 |
| battmodels/excess-properties-dataset | 55 | 0 | 55 |
| ipinfo/python | 0 | 49 | 49 |
| alan-turing-institute/awesome-avd | 48 | 0 | 48 |
| numpy/numpy | 1 | 41 | 42 |
| scipy/scipy | 0 | 40 | 40 |
| ropensci/waywiser | 39 | 0 | 39 |
| interactions-py/library | 0 | 38 | 38 |
| adokter/biorad | 34 | 0 | 34 |
| ropensci/gigs | 33 | 0 | 33 |
| biorgeo/bioregion | 32 | 0 | 32 |
| epiforecasts/epinow2 | 31 | 0 | 31 |
| matplotlib/matplotlib | 1 | 29 | 30 |
| 524d/comparems2 | 28 | 0 | 28 |
| ucl/stir | 26 | 0 | 26 |
| brainglobe/brainglobe-atlasapi | 25 | 0 | 25 |
| scikit-learn/scikit-learn | 0 | 25 | 25 |
| seandavi/geoquery | 23 | 0 | 23 |
| bioc/geoquery | 23 | 0 | 23 |
| ai-sdc/sacro-ml | 22 | 0 | 22 |
Mention Sources
Softcite
2662
CZI
1515
SoftwareKG
1095
926 software items confirmed by multiple sources
Publications
Citing Authors576,584
Citing Institutions30,015
Top Citing Institutions
Centre National de la Recherche Scientifique(FR)
7106 citations
Harvard University(US)
3392 citations
University of Oxford(GB)
3202 citations
University of Cambridge(GB)
2936 citations
Chinese Academy of Sciences(CN)
2719 citations
University College London(GB)
2590 citations
Recent Citing Papers
- Relativistic calculations of M-shell photoionization and X-ray production cross-sections for Hg at 5.96keV excitation energy2014cites: The xraylib library for X-ray–matter interactions. Recent developments
- Branched Latent Neural Maps2023cites: 3D Slicer as an image computing platform for the Quantitative Imaging Network
- Genomic characterization of multi-drug resistant ESBL-producing Escherichia coli ST58 causing fatal colibacillosis in critically endangered Brazilian merganser (Mergus octosetaceus)2020cites: <i>In Silico</i> Detection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing
- Analysis of the H.E.S.S. public data release with ctools2019cites: Matplotlib: A 2D Graphics Environment
- Jet Structure and Burst Environment of GRB 221009A2024cites: Matplotlib: A 2D Graphics Environment
Repositories
Software Used By
Harvard University(US)
63 papers
Centre National de la Recherche Scientifique(FR)
59 papers
Stanford University(US)
56 papers
ETH Zurich(CH)
56 papers
University College London(GB)
55 papers
University of Washington(US)
43 papers
University of Oxford(GB)
42 papers
University of California, Berkeley(US)
39 papers
Massachusetts Institute of Technology(US)
38 papers
University of Michigan(US)
36 papers
External User Breakdown
Issue Reporters88,114
Reviewers0
Triagers2,561
Supporters1,016
Publications
Citing Domains4
Citing Fields26
Citing Subfields247
Top Citing Fields
Biochemistry, Genetics and Molecular Biology69653
Medicine50913
Engineering39328
Computer Science35094
Physics and Astronomy28699
Environmental Science24729
Neuroscience20073
Agricultural and Biological Sciences19294
Materials Science15244
Earth and Planetary Sciences13428
Top Citing Subfields
Molecular Biology49816
Astronomy and Astrophysics18068
Genetics15370
Artificial Intelligence15335
Cognitive Neuroscience13842
Materials Chemistry13045
Ecology12314
Biomedical Engineering9717
Plant Science9492
Computer Vision and Pattern Recognition8954
Repositories
Software by Research Field
Computer Science
803
Biochemistry, Genetics and Molecular Biology
572
Engineering
401
Medicine
254
Physics and Astronomy
216
Environmental Science
200
Decision Sciences
186
Materials Science
139
Earth and Planetary Sciences
133
Neuroscience
125
Agricultural and Biological Sciences
95
Chemistry
83
Social Sciences
69
Mathematics
66
Psychology
46
Countries (81)
3,339
United States
1,177
Germany
996
United Kingdom
610
France
417
Canada
373
Switzerland
371
Australia
303
The Netherlands
290
Spain
220
Italy
180
China
129
Sweden
127
Belgium
102
Japan
101
Denmark
96
Portugal
92
Austria
68
India
57
Norway
53
Luxembourg
40
Iceland
40
Russia
39
Argentina
33
Türkiye
33
Finland
30
Brazil
29
Hong Kong
29
Czechia
26
South Korea
24
Poland
24
South Africa
23
Singapore
20
Greece
19
Ireland
18
New Zealand
16
Slovenia
15
Bulgaria
15
Israel
13
Chile
10
Romania
9
Bangladesh
8
Venezuela
8
Cyprus
8
Hungary
7
Estonia
5
Nigeria
4
Macao
4
Slovakia
4
Sri Lanka
3
Egypt
3
Costa Rica
3
Honduras
3
Fiji
3
Belarus
3
Ecuador
3
Croatia
2
Colombia
2
Philippines
2
Malta
2
Saudi Arabia
2
Indonesia
2
Kenya
2
Ukraine
1
Mexico
1
United Arab Emirates
1
Peru
1
North Macedonia
1
Taiwan
1
South Sudan
1
Bahamas
1
Ivory Coast
1
Latvia
1
Sierra Leone
1
Mauritius
1
Nicaragua
1
Ethiopia
1
Jordan
1
Iran
1
U.S. Virgin Islands
1
Azerbaijan
1
Kazakhstan
1776 institutions total, 1776 with coordinates
Open Access Status
Green OA
Gold OA
Unknown
Closed Access
Hybrid OA
Bronze OA
Research Topics
Scientific Computing and Data Management
103
Genomics and Phylogenetic Studies
86
Machine Learning in Materials Science
58
Cell Image Analysis Techniques
45
Neural dynamics and brain function
44
Parallel Computing and Optimization Techniques
44
Computational Physics and Python Applications
39
Distributed and Parallel Computing Systems
38
Bioinformatics and Genomic Networks
37
Other
200
Publication Venues
Zenodo (CERN European Organization for Nuclear Research)
323
The Journal of Open Source Software
269
arXiv (Cornell University)
104
Bioinformatics
39
bioRxiv (Cold Spring Harbor Laboratory)
32
Lecture notes in computer science
19
Computer Physics Communications
14
Other
88