Dependencies

658

Software Dependencies (Direct)

Software Dependencies (Transitive)

310

Software Mentioned in Papers

200

Software in Cited Papers

23,346

Declared Dependencies

From manifests

3,188

Discovered (Hidden)

Symbol + wrapper analysis

559

System Libraries

With Known Vulns

None detected

What Software Does This Research Build On?

Via Cited DOIs (depth 1)

Repos whose canonical DOI paper is directly cited by seed papers.

Repository	Seed Papers ▼
neha1010/matplot	9
deepin-community/matplotlib	9
swe-bench-repos/matplotlib__matplotlib	9
matplotlib/matplotlib	9
pydata/xarray	4
swe-bench-repos/pydata__xarray	4
flamingbear/original-fork-xarray	4
openhands-commit0/xarray	4
deepin-community/python-xarray	4
bambinos/bambi	2
benscott758/arvizz	2
tylerdurden120/data_platform	2
scikit-image/scikit-image	2
arviz-devs/arviz	2
deepin-community/skimage	2
swe-gym-raw/scikit-image__scikit-image	2
yuqiuya/yang	1
iwebbo/yolov5-mouse-control	1
m-arslanarshad/car-accident-yolo	1
tcccth/yolov5_violence_detect	1

Via Reference Chain (depth 2)

Repos found one level deeper in citation chains.

Repository	Ref. Papers ▼
egonw/softpaper-citation-cff	3
pyomo/pyomo	2
gajahterban/pyomo	2
zzygith/pyomorevised	2
cvxgrp/scs	2
hongyx11/parsec4dare	1
mwaskom/seaborn	1
yannickjadoul/parselmouth	1
vida-nyu/reprozip	1
hpparvi/ldtk	1
swe-bench-repos/mwaskom__seaborn	1
deepin-community/seaborn	1
se-jaeger/data-imputation-paper	1
pandas-dev/pandas	1
deeplabcut/deeplabcut-live	1
icldisco/parsec	1
chandra-marx/marxs	1
bsc-wdc/compss	1
openhands-commit0/seaborn	1
xwy-bit/deepmd	1

Software Mentions in Seed Papers

Software	Papers ▼	Mapped
code	9	unmapped
scipy	8	mapped
numpy	8	mapped
scikit-learn	7	mapped
library	7	mapped
linux	7	unmapped
windows	6	unmapped
python	6	mapped
matplotlib	6	mapped
matlab	5	unmapped
libraries	5	unmapped
pypi	5	unmapped
cython	4	mapped
xarray	4	mapped
pandas	4	mapped
api	3	unmapped
package	3	unmapped
script	3	unmapped
scripts	3	unmapped
scikit-image	3	mapped

What Software Do Referenced Papers Use?

Software mentioned in papers that seed papers reference.

Software	Ref. Papers ▼	Linked
code	16	unlinked
python	13	linked
library	12	linked
matlab	12	unlinked
scikit-learn	12	linked
scripts	10	unlinked
scipy	10	linked
linux	10	unlinked
windows	10	unlinked
numpy	10	linked
script	9	unlinked
matplotlib	9	linked
github	7	linked
tensorflow	6	linked
rdkit	6	unlinked
pypi	5	unlinked
r	5	unlinked
interface	5	linked
cython	5	linked
pymatgen	5	linked

Ecosystem & Depth

Ecosystem Distribution

pypi

101.3K(59%)

actions

38.7K(22%)

conda

21.5K(13%)

npm

7.9K(5%)

docker

981(1%)

811(0%)

cargo

334(0%)

rubygems

163(0%)

maven

118(0%)

Other

222(0%)

Depth Distribution

Direct (layer 1)

23.5K(13%)

Transitive (layer 2)

42.6K(24%)

Transitive (layer 3)

54.8K(30%)

Deep (layer 4+)

45.4K(25%)

Unknown

14.2K(8%)

Dependency Types & Detection

Dependency Types

runtime

173.3K(96%)

dev

4.4K(2%)

test

1.9K(1%)

build

858(0%)

Detection Methods

manifest_parsing

177.3K(98%)

symbol_analysis

3.2K(2%)

Languages

Python

3.0K(90%)

C++

76(2%)

74(2%)

Jupyter Notebook

56(2%)

HTML

24(1%)

TypeScript

21(1%)

JavaScript

19(1%)

Other

65(2%)

Licenses

mit

1.3K

apache-2.0

652

other

582

Unknown

486

bsd-3-clause

370

bsd-2-clause

100

gpl-3.0

Other

199

177,273 declared, 3,188 discovered

177273

Declared (177273)Discovered (3188)

Wrapper-Detected Pairs

Language packages that wrap underlying system libraries.

Package	Ecosystem	System Library	Confidence ▼
ddtrace	pypi	_native.cpython-310-x86_64-linux-gnu.so	100%
ortools	pypi	absl_base	100%
ortools	pypi	absl_city	100%
ortools	pypi	absl_civil_time	100%
ortools	pypi	absl_cord_internal	100%
ortools	pypi	absl_cordz_functions	100%
ortools	pypi	absl_cordz_handle	100%
ortools	pypi	absl_cordz_info	100%
ortools	pypi	absl_crc_cord_state	100%
ortools	pypi	absl_crc_cpu_detect	100%
ortools	pypi	absl_crc_internal	100%
ortools	pypi	absl_crc32c	100%
ortools	pypi	absl_debugging_internal	100%
ortools	pypi	absl_decode_rust_punycode	100%
ortools	pypi	absl_demangle_internal	100%
ortools	pypi	absl_demangle_rust	100%
ortools	pypi	absl_die_if_null	100%
ortools	pypi	absl_examine_stack	100%
ortools	pypi	absl_exponential_biased	100%
ortools	pypi	absl_flags_commandlineflag_internal	100%

Symbol-Analysis Discoveries

Undeclared dependencies found via binary/symbol analysis.

Target	Type	Confidence ▼	Sources
glibc(runtime)	library	100%	564
gcc(runtime)	library	100%	352
libstdcxx(runtime)	library	100%	304
zlib(compression)	library	100%	68
openblas(linear_algebra)	library	100%	63
openmp(runtime)	library	100%	52
cuda(gpu)	library	100%	37
cusparse(gpu)	library	100%	28
curand(gpu)	library	100%	28
openssl(crypto)	library	100%	27
nvrtc(gpu)	library	100%	23
gfortran(runtime)	library	100%	23
libpng(image)	library	100%	23
cudnn(gpu)	library	100%	21
cusolver(gpu)	library	100%	21
cufft(gpu)	library	100%	20
quadmath(math)	library	100%	19
nccl(gpu)	library	100%	18
nvToolsExt(gpu)	library	100%	17
cutensor(gpu)	library	100%	16

Transitive Chain Depth

23,506

Direct (layer 1)

42,570

Transitive (layer 2)

54,787

Transitive (layer 3)

45,442

Deep (layer 4+)

14,156

Unknown

Security Advisories

No security advisories found for portfolio dependencies.

Package Health

Health Score Distribution

Not Scored

52(100%)

System Library Health

Name	Category	Health	Funded	Deps ▼
glibc	runtime	-	unfunded	937
gcc	runtime	-	unfunded	715
libstdcxx	runtime	-	unfunded	667
zlib	compression	-	unfunded	421
openblas	linear_algebra	-	unfunded	409
gfortran	runtime	-	unfunded	367
quadmath	math	-	unfunded	363
openmp	runtime	-	unfunded	117
boringssl	crypto	-	unfunded	87
openssl	crypto	-	unfunded	86
libpng	image	-	unfunded	84
xz	compression	-	unfunded	73
gssapi_krb	other	-	unfunded	72
pcre2	other	-	unfunded	72
k5crypto	crypto	-	unfunded	71
Xau	other	-	unfunded	71
xcb	other	-	unfunded	71
com_err	other	-	unfunded	71
krb5support	other	-	unfunded	71
keyutils	other	-	unfunded	70

Most widely used packages across portfolio repositories.

Shared only (50)

Package	Ecosystem	Type	Detection	Health	Used By ▼
actions/checkout	actions	direct	declared	-	1323 repos
actions/setup-python	actions	direct	declared	-	1280 repos
sphinx	pypi	direct	declared	-	919 repos
actions/upload-artifact	actions	direct	declared	-	918 repos
pytest	pypi	direct	declared	-	885 repos
pypa/gh-action-pypi-publish	actions	direct	declared	-	866 repos
actions/download-artifact	actions	direct	declared	-	835 repos
typing-extensions	pypi	direct	declared	-	793 repos
flake8	pypi	direct	declared	-	769 repos
packaging	pypi	direct	declared	-	767 repos
pytest-cov	pypi	direct	declared	-	759 repos
sphinx-rtd-theme	pypi	direct	declared	-	758 repos
docutils	pypi	direct	declared	-	734 repos
actions/github-script	actions	direct	declared	-	726 repos
tomli	pypi	direct	declared	-	722 repos
pluggy	pypi	direct	declared	-	721 repos
importlib-metadata	pypi	direct	declared	-	719 repos
docker/setup-qemu-action	actions	direct	declared	-	718 repos
codecov/codecov-action	actions	direct	declared	-	717 repos
jinja2	pypi	direct	declared	-	709 repos

Computed 7/28/2026, 11:31:08 AM across 4674 repositories

Dependencies

Dependencies At A Glance

Research Software Dependencies

Via Cited DOIs (depth 1)

Via Reference Chain (depth 2)

Software Mentions in Seed Papers

Supply Chain Composition

Ecosystem Distribution

Depth Distribution

Dependency Types

Detection Methods

Repository Composition

Languages

Licenses

Hidden Dependencies — What PRSM Discovered

Wrapper-Detected Pairs

Symbol-Analysis Discoveries

Transitive Chain Depth

Risk & Health

Health Score Distribution

System Library Health

Top Dependencies

System Libraries