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Community Health
Community Size
1,153
Authors
45
Active Authors
last 2 years
148
Multi-Pub Authors
2+ publications
4.5%
Top Author Share
top 10 authors
11,775
Contributors
674
Active Contributors
2,869
Core Contributors
2,986
Multi-Repo
2+ repos
32,188
Participants
Publications
Avg Authors/Pub9.6
International75 (52.4%)
Cross-Institutional114 (79.7%)
Network Density0.0443
Collaboration Bridges
H
Hervé MénagerA
Anna KreshukJ
Josh MooreM
Matthew RocklinK
Krzysztof J. GorgolewskiDomain Connectors
R
Robin Browaeys7 fields, 13 topicsB
Bùi Quang Minh6 fields, 12 topicsY
Yvan Saeys5 fields, 10 topicsA
Arndt von Haeseler5 fields, 8 topicsJ
Jan G. Bjaalie5 fields, 8 topicsRepositories
Avg Contributors/Repo54.0
International Repos0
Cross-Institutional Repos0
Network Density0.0263
Domain Connector Repos
brainglobe/brainglobe-atlasapi10 fields, 32 topics
saeyslab/nichenetr7 fields, 13 topics
iqtree/iqtree26 fields, 18 topics
biocypher/biocypher6 fields, 6 topics
opensim-org/opensim-core4 fields, 4 topics
Publications
Author Concentration5%
Healthy (3+ authors)123/143 (86%)
Solo author16/143 (11%)
At-Risk Publications (9)
| Publication | Author | Year |
|---|---|---|
| Matplotlib: A 2D Graphics Environment | John D. Hunter | 2007 |
| <b>tolerance</b>: An<i>R</i>Package for Estimating Tolerance Intervals | Derek S. Young | 2010 |
| Computing Tolerance Intervals and Regions Using R | Derek S. Young | 2014 |
| Normal Tolerance Interval Procedures in the tolerance Package | S. Young Derek | 2016 |
| Data Structures for Statistical Computing in Python | Wes McKinney | 2010 |
Repositories
Portfolio Bus Factor:2
Healthy distribution136/257 (53%)
Single maintainer49/257 (19%)
At-Risk Repositories (73)
| Repository | Top % | Core | Active |
|---|---|---|---|
| cran/limma | 100% | 1 | |
| veupathdb/microbiomedb | 100% | 1 | |
| cran/mixtools | 100% | 1 | |
| cran/tolerance | 100% | 1 | |
| saeyslab/multinichenetr | 100% | 1 |
Publications
Publication Trend↘
Author Consistency0.96
Avg Years Active/Author1.2
Publications by Year
2019
21
2020
15
2021
17
2022
13
2023
13
2024
13
2025
7
2026
15
Repositories
Commits (52 weeks)76,485
Commits (12 weeks)18,745→
Avg Contributor Consistency0.51
Avg Active Weeks/Contributor33.2
Author Retention
| Year | Total | New | Ret. | Churn |
|---|---|---|---|---|
| 2021 | 87 | 79 | 8 | 118 |
| 2022 | 169 | 156 | 13 | 74 |
| 2023 | 169 | 156 | 13 | 156 |
| 2024 | 144 | 127 | 17 | 152 |
| 2025 | 29 | 28 | 1 | 143 |
| 2026 | 24 | 16 | 8 | 21 |
Overall Retention Rate0.7%
Contributor Retention
New Contributors (12mo)195
Retained596
Churned6817
Retention Rate8.0%
Engagement
Citing Community
Citing Authors373,525
Citing Institutions23,325
Citing Topic Breadth
Domains4
Fields26
Subfields246
Topics3,645
Top Citing Fields
Biochemistry, Genetics and Molecular Biology40,651
Medicine27,714
Physics and Astronomy22,272
Engineering16,916
Neuroscience16,479
Computer Science16,371
Environmental Science12,383
Agricultural and Biological Sciences11,039
Earth and Planetary Sciences7,517
Psychology6,030
Top Citing Subfields
Molecular Biology31,453
Astronomy and Astrophysics16,479
Cognitive Neuroscience12,014
Genetics8,188
Artificial Intelligence8,054
Radiology, Nuclear Medicine and Imaging7,294
Plant Science6,200
Biomedical Engineering6,165
Ecology6,138
Instrumentation5,740
Repository Activity
Issues Opened42,868
Issues Closed39,911
PRs Opened49,248
PRs Reviewed0
Comments98,484
Helpful Reactions15,934
Avg 0.16 reactions/comment
29623 reporters0 reviewers322 triagers390 support
Champions
Most Prolific Authors
B
Bùi Quang Minh
15 publications
A
Arndt von Haeseler
8 publications
T
Troy W. Margrie
6 publications
High-Impact Maintainers
TensorFlower Gardener
179 citations, 258,972 stars
Qianli Scott Zhu
179 citations, 258,237 stars
Yong Tang
179 citations, 195,050 stars
Longest Author Careers
O
Oliver Kohlbacher
17 years (2008-2024)
B
Bùi Quang Minh
12 years (2013-2024)
H
Henry van den Bedem
10 years (2015-2024)
Longevity Leaders
Claus Ibsen
19 years, 97% consistency
Bruce Fischl
29 years, 63% consistency
Melissa Linkert
21 years, 87% consistency
Community Advocates
codecov[bot]
3017 comments, 2 reactions
github-actions[bot]
2181 comments, 3 reactions
dependabot[bot]
957 comments, 0 reactions
Top People
Top Authors (1000)
| Author | Pubs ▼ | Institutions | Topics | Years |
|---|---|---|---|---|
B Bùi Quang Minh | 15 | 4 | 12 | 2013-2024 |
A Arndt von Haeseler | 8 | 3 | 8 | 2014-2020 |
T Troy W. Margrie | 6 | 5 | 12 | 2016-2025 |
R Robin Browaeys | 5 | 2 | 13 | 2019-2022 |
A Adam L. Tyson | 5 | 4 | 11 | 2020-2025 |
Y Yvan Saeys | 5 | 3 | 10 | 2018-2022 |
R Robert Lanfear | 5 | 1 | 6 | 2019-2024 |
D D.A. Keedy | 4 | 5 | 6 | 2015-2024 |
O Osvaldo A. Martin | 4 | 4 | 6 | 2019-2026 |
J Jan G. Bjaalie | 4 | 1 | 8 | 2023-2026 |
J James S. Fraser | 4 | 1 | 6 | 2015-2024 |
W Wouter Saelens | 4 | 4 | 8 | 2018-2022 |
H Henry van den Bedem | 4 | 4 | 6 | 2015-2024 |
A Alexandre Gramfort | 4 | 10 | 5 | 2013-2018 |
K Krzysztof J. Gorgolewski | 4 | 1 | 5 | 2017-2019 |
R Rob Patro | 3 | 1 | 7 | 2021-2022 |
I Ingvild E. Bjerke | 3 | 1 | 7 | 2023-2026 |
F Federico Claudi | 3 | 3 | 8 | 2020-2022 |
B Brett G. Olivier | 3 | 3 | 1 | 2018-2020 |
S Sarah Keating | 3 | 2 | 1 | 2018-2020 |
Top Contributors (1000)
| Contributor | Repos | Commits ▼ | Status | Consistency |
|---|---|---|---|---|
| TensorFlower Gardener | 3 | 57,777 | Core | 0.64 |
| Claus Ibsen | 1 | 26,685 | Core | 0.97 |
 biocondabot | 1 | 22,057 | Core | 1.00 |
 Andrea Cosentino | 1 | 18,443 | Core | 0.72 |
 Carlos Cordoba | 2 | 14,990 | Core | 0.46 |
 hanars | 1 | 13,604 | Core | 0.00 |
 scoder | 1 | 11,994 | Core | 0.79 |
 Marius van den Beek | 5 | 11,133 | Core | 0.50 |
 Min RK | 13 | 10,726 | Core | 0.17 |
 Bradley Lowekamp | 4 | 10,590 | Core | 0.44 |
 Dannon | 1 | 10,248 | Core | 0.84 |
 John Chilton | 3 | 10,097 | Core | 0.89 |
 Jon Peirce | 2 | 9,873 | Core | 0.46 |
 e-pettersen | 1 | 9,861 | Core | 0.96 |
 Aysam Guerler | 1 | 9,739 | Core | 0.89 |
 Takeshi KOMIYA | 2 | 9,128 | Core | 0.28 |
 Tom Goddard | 1 | 8,923 | Core | 0.87 |
 Steven Silvester | 6 | 8,646 | Core | 0.35 |
| Melissa Linkert | 3 | 8,357 | Core | 0.87 |
 Colin Diesh | 2 | 7,838 | Core | 0.95 |