Back to Dashboard
Dependencies
85
Software Dependencies (Direct)
170
Software Dependencies (Transitive)
1,464
Software Mentioned in Papers
200
Software in Cited Papers
6,859
Declared Dependencies
From manifests
575
Discovered (Hidden)
Symbol + wrapper analysis
141
System Libraries
0
With Known Vulns
None detected
What Software Does This Research Build On?
Via Cited DOIs (depth 1)
Repos whose canonical DOI paper is directly cited by seed papers.
Via Reference Chain (depth 2)
Repos found one level deeper in citation chains.
Software Mentions in Seed Papers
| Software | Papers ▼ | Mapped |
|---|---|---|
| linux | 22 | unmapped |
| python | 20 | mapped |
| github | 20 | mapped |
| matlab | 16 | unmapped |
| code | 16 | unmapped |
| windows | 16 | unmapped |
| scripts | 16 | unmapped |
| script | 13 | unmapped |
| r | 12 | unmapped |
| matplotlib | 10 | mapped |
| docker | 9 | mapped |
| iq-tree | 9 | unmapped |
| scipy | 8 | mapped |
| java | 8 | unmapped |
| numpy | 8 | mapped |
| macos | 7 | unmapped |
| library | 7 | mapped |
| scikit-learn | 7 | mapped |
| imagej | 7 | mapped |
| phyml | 6 | unmapped |
What Software Do Referenced Papers Use?
Software mentioned in papers that seed papers reference.
| Software | Ref. Papers ▼ | Linked |
|---|---|---|
| python | 80 | linked |
| code | 76 | unlinked |
| scripts | 73 | unlinked |
| r | 68 | unlinked |
| linux | 65 | unlinked |
| github | 56 | linked |
| script | 55 | unlinked |
| matlab | 50 | unlinked |
| windows | 44 | unlinked |
| blast | 42 | unlinked |
| bioconductor | 36 | unlinked |
| matplotlib | 34 | linked |
| scipy | 32 | linked |
| imagej | 30 | linked |
| numpy | 30 | linked |
| scikit-learn | 28 | linked |
| seurat | 25 | unlinked |
| ensembl | 24 | unlinked |
| c + + | 23 | unlinked |
| java | 22 | unlinked |
Ecosystem & Depth
Ecosystem Distribution
pypi
19.3K(37%)
npm
15.9K(31%)
actions
8.2K(16%)
conda
7.3K(14%)
go
667(1%)
docker
273(1%)
cran
91(0%)
rubygems
66(0%)
maven
13(0%)
Other
9(0%)
Depth Distribution
Direct (layer 1)
6.9K(12%)
Transitive (layer 2)
10.8K(19%)
Transitive (layer 3)
13.5K(24%)
Deep (layer 4+)
8.4K(15%)
Unknown
16.0K(29%)
Dependency Types & Detection
Dependency Types
runtime
48.5K(87%)
dev
6.8K(12%)
build
265(0%)
test
96(0%)
Detection Methods
manifest_parsing
55.0K(99%)
symbol_analysis
575(1%)
Languages
Python
72(77%)
C++
7(7%)
C
3(3%)
Julia
3(3%)
Common Workflow Language
1(1%)
Cython
1(1%)
DIGITAL Command Language
1(1%)
Other
6(6%)
Licenses
Unknown
164
bsd-3-clause
26
apache-2.0
25
other
24
mit
14
gpl-2.0
1
isc
1
Other
2
55,010 declared, 575 discovered
55010
Declared (55010)Discovered (575)
Wrapper-Detected Pairs
Language packages that wrap underlying system libraries.
| Package | Ecosystem | System Library | Confidence ▼ |
|---|---|---|---|
| cupy-rocm-5-0 | pypi | amdhip | 100% |
| cupy-rocm-4-2 | pypi | amdhip | 100% |
| cvxopt | pypi | amdhip | 100% |
| cupy-rocm-4-0 | pypi | amdhip | 100% |
| cupy-rocm-7-0 | pypi | amdhip | 100% |
| tyba-cvxopt | pypi | amdhip | 100% |
| cupy-rocm-4-3 | pypi | amdhip | 100% |
| pyarrow | pypi | arrow_acero | 100% |
| pyarrow-cramjam | pypi | arrow_acero | 100% |
| pyarrow | pypi | arrow_compute | 100% |
| popperrow | pypi | arrow_cuda | 100% |
| pyarrow-cramjam | pypi | arrow_dataset | 100% |
| pyarrow | pypi | arrow_dataset | 100% |
| pyarrow-cramjam | pypi | arrow_flight | 100% |
| pyarrow | pypi | arrow_flight | 100% |
| pyarrow | pypi | arrow_python | 100% |
| pyarrow-cramjam | pypi | arrow_python | 100% |
| popperrow | pypi | arrow_python | 100% |
| pyarrow | pypi | arrow_substrait | 100% |
| pyarrow-cramjam | pypi | arrow_substrait | 100% |
Symbol-Analysis Discoveries
Undeclared dependencies found via binary/symbol analysis.
| Target | Type | Confidence ▼ | Sources |
|---|---|---|---|
| glibc(runtime) | library | 100% | 66 |
| gcc(runtime) | library | 100% | 61 |
| libstdcxx(runtime) | library | 100% | 58 |
| openblas(linear_algebra) | library | 100% | 28 |
| cufft(gpu) | library | 100% | 18 |
| curand(gpu) | library | 100% | 18 |
| cuda(gpu) | library | 100% | 18 |
| nccl(gpu) | library | 100% | 18 |
| nvrtc(gpu) | library | 100% | 18 |
| cusparse(gpu) | library | 100% | 18 |
| cusolver(gpu) | library | 100% | 18 |
| openmp(runtime) | library | 100% | 17 |
| cudnn(gpu) | library | 100% | 16 |
| cutensor(gpu) | library | 100% | 13 |
| nvToolsExt(gpu) | library | 100% | 12 |
| amdhip(gpu) | library | 100% | 7 |
| tbb(threading) | library | 100% | 6 |
| gfortran(runtime) | library | 100% | 6 |
| rccl(gpu) | library | 100% | 5 |
| hiprand(gpu) | library | 100% | 5 |
Transitive Chain Depth
6,864
Direct (layer 1)
10,760
Transitive (layer 2)
13,537
Transitive (layer 3)
8,423
Deep (layer 4+)
16,001
Unknown
Security Advisories
No security advisories found for portfolio dependencies.
Package Health
Health Score Distribution
Not Scored
42(100%)
System Library Health
| Name | Category | Health | Funded | Deps ▼ |
|---|---|---|---|---|
| glibc | runtime | - | unfunded | 152 |
| gcc | runtime | - | unfunded | 145 |
| libstdcxx | runtime | - | unfunded | 142 |
| openblas | linear_algebra | - | unfunded | 114 |
| zlib | compression | - | unfunded | 91 |
| gfortran | runtime | - | unfunded | 90 |
| quadmath | math | - | unfunded | 87 |
| libpng | image | - | unfunded | 80 |
| lz4 | compression | - | unfunded | 79 |
| zstd | compression | - | unfunded | 79 |
| brotli | compression | - | unfunded | 79 |
| libwebp | image | - | unfunded | 79 |
| sharpyuv | other | - | unfunded | 79 |
| libjpeg-turbo | image | - | unfunded | 79 |
| freetype | image | - | unfunded | 78 |
| xz | compression | - | unfunded | 78 |
| lcms | other | - | unfunded | 78 |
| Xau | other | - | unfunded | 78 |
| libtiff | image | - | unfunded | 78 |
| openjp | other | - | unfunded | 78 |
Most widely used packages across portfolio repositories.
| Package | Ecosystem | Type | Detection | Health | Advisories | Used By ▼ |
|---|---|---|---|---|---|---|
| actions/checkout | actions | direct | declared | - | 0 | 116 repos |
| actions/setup-python | actions | direct | declared | - | 0 | 111 repos |
| actions/upload-artifact | actions | direct | declared | - | 0 | 107 repos |
| sphinx | pypi | direct | declared | - | 0 | 107 repos |
| actions/download-artifact | actions | direct | declared | - | 0 | 101 repos |
| docker/setup-qemu-action | actions | direct | declared | - | 0 | 100 repos |
| pytest | pypi | direct | declared | - | 0 | 100 repos |
| codecov/codecov-action | actions | direct | declared | - | 0 | 99 repos |
| urllib3 | pypi | direct | declared | - | 0 | 99 repos |
| matplotlib | pypi | direct | declared | - | 0 | 98 repos |
| numpy | pypi | direct | declared | - | 0 | 98 repos |
| packaging | pypi | direct | declared | - | 0 | 98 repos |
| scipy | pypi | direct | declared | - | 0 | 98 repos |
| sphinx-copybutton | pypi | direct | declared | - | 0 | 98 repos |
| wheel | pypi | direct | declared | - | 0 | 98 repos |
| actions/cache | actions | direct | declared | - | 0 | 97 repos |
| actions/stale | actions | direct | declared | - | 0 | 97 repos |
| pandas | pypi | direct | declared | - | 0 | 97 repos |
| pillow | pypi | direct | declared | - | 0 | 97 repos |
| twine | pypi | direct | declared | - | 0 | 97 repos |
Computed 7/28/2026, 10:27:33 AM across 471 repositories