Back to Dashboard
Impact Analysis
365,540
Total Citations
123,543
Unique Citing Papers
15
Citing Fields
20
Citing Institutions
204
Linked Publications
35 canonical · 143 mentions · 26 papers
83,480
Papers Depending on Software
2592.7M
Package Downloads
128,733
Dependent Packages
29,619
External Users
Non-contributor participants
Publications
Total Citations365,540
Median Citations114.5
Portfolio FWCI72.53
Citation Trajectory
→1415
12
2065
13
2979
14
3743
15
5081
16
6957
17
10418
18
16413
19
26479
20
40580
21
46169
22
53509
23
65694
24
65251
25
15677
26
Repositories
Paper Connections204
Papers Depending on Software83,480
Package Downloads2592.7M
Dependent Packages128,733
Dependent Repos1,755,936
Adoption Signals
Issues from Users32,704
PRs from Users27,369
External Unique Users29,619
Publications
72.53FWCI (132 papers)
Percentile Distribution
Top 1% (121)Top 10% (7)No data (46)
Citation Distribution
0
23
1-5
13
6-20
16
21-50
14
51-100
20
101-500
30
500+
58
Top Papers
| Title | Cit. ▼ | FWCI | Pctl |
|---|---|---|---|
| Matplotlib: A 2D Graphics Environment | 37,869 | 30.17 | 100th |
| IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies | 26,786 | 74.72 | 100th |
| SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing | 26,638 | 93.32 | 100th |
| Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 | 23,068 | 720.21 | 100th |
| Array programming with NumPy | 20,849 | 1275.47 | 100th |
| Model-based Analysis of ChIP-Seq (MACS) | 19,576 | 53.39 | 100th |
| New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0 | 18,743 | 197.07 | 100th |
| ModelFinder: fast model selection for accurate phylogenetic estimates | 17,996 | 1014.14 | 100th |
| Minimap2: pairwise alignment for nucleotide sequences | 16,048 | 367.05 | 100th |
| IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era | 15,730 | 511.83 | 100th |
Repositories
Top Repos by Paper Connections
| Repository | Citing | Mention | Total ▼ |
|---|---|---|---|
| brainglobe/brainglobe-atlasapi | 25 | 0 | 25 |
| ipinfo/python | 0 | 20 | 20 |
| iqtree/iqtree2 | 20 | 0 | 20 |
| sigmavirus24/github3 | 0 | 20 | 20 |
| bactopia/bactopia | 7 | 5 | 12 |
| scikit-learn/scikit-learn | 0 | 11 | 11 |
| matplotlib/matplotlib | 1 | 10 | 11 |
| docker/docker-py | 0 | 9 | 9 |
| numpy/numpy | 1 | 8 | 9 |
| scipy/scipy | 0 | 9 | 9 |
| pandas-dev/pandas | 2 | 6 | 8 |
| interactions-py/library | 0 | 8 | 8 |
| francescortiz/image | 0 | 7 | 7 |
| saeyslab/nichenetr | 6 | 0 | 6 |
| scikit-image/scikit-image | 1 | 5 | 6 |
| arviz-devs/arviz | 6 | 0 | 6 |
| deep-mi/fastsurfer | 5 | 0 | 5 |
| sbmlteam/libsbml | 5 | 0 | 5 |
| pydata/xarray | 2 | 3 | 5 |
| kubernetes-client/python | 0 | 5 | 5 |
Mention Sources
Softcite
685
CZI
871
SoftwareKG
485
435 software items confirmed by multiple sources
Publications
Citing Authors373,525
Citing Institutions23,325
Top Citing Institutions
Centre National de la Recherche Scientifique(FR)
5229 citations
Harvard University(US)
2335 citations
University of Oxford(GB)
2264 citations
University of Cambridge(GB)
1983 citations
Stanford University(US)
1867 citations
University College London(GB)
1787 citations
Recent Citing Papers
- Branched Latent Neural Maps2023cites: 3D Slicer as an image computing platform for the Quantitative Imaging Network
- Analysis of the H.E.S.S. public data release with ctools2019cites: Matplotlib: A 2D Graphics Environment
- Jet Structure and Burst Environment of GRB 221009A2024cites: Matplotlib: A 2D Graphics Environment
- Measurement of prompt charged-particle production in proton-proton collisions at a centre-of-mass energy of 13 TeV2021cites: Matplotlib: A 2D Graphics Environment
- Gridded land use data for the conterminous United States 1940–20152022cites: Array programming with NumPy
Repositories
Software Used By
Harvard University(US)
16 papers
Stanford University(US)
13 papers
Australian National University(AU)
10 papers
Centre National de la Recherche Scientifique(FR)
10 papers
Heidelberg University(DE)
10 papers
Max Perutz Labs(AT)
10 papers
Medical University of Vienna(AT)
9 papers
University of California, San Francisco(US)
8 papers
University College London(GB)
7 papers
University of Vienna(AT)
7 papers
External User Breakdown
Issue Reporters28,566
Reviewers0
Triagers195
Supporters159
Publications
Citing Domains4
Citing Fields26
Citing Subfields246
Top Citing Fields
Biochemistry, Genetics and Molecular Biology40651
Medicine27714
Physics and Astronomy22272
Engineering16916
Neuroscience16479
Computer Science16371
Environmental Science12383
Agricultural and Biological Sciences11039
Earth and Planetary Sciences7517
Psychology6030
Top Citing Subfields
Molecular Biology31453
Astronomy and Astrophysics16479
Cognitive Neuroscience12014
Genetics8188
Artificial Intelligence8054
Radiology, Nuclear Medicine and Imaging7294
Plant Science6200
Biomedical Engineering6165
Ecology6138
Instrumentation5740
Repositories
Software by Research Field
Biochemistry, Genetics and Molecular Biology
91
Computer Science
43
Medicine
29
Neuroscience
20
Decision Sciences
20
Environmental Science
16
Agricultural and Biological Sciences
15
Earth and Planetary Sciences
13
Engineering
8
Materials Science
8
Psychology
5
Immunology and Microbiology
3
Mathematics
3
Chemistry
3
Health Professions
2
Countries (39)
743
United States
298
Germany
166
France
165
United Kingdom
121
Belgium
69
Austria
68
Canada
58
Australia
57
Switzerland
47
Denmark
36
Norway
28
Russia
28
Spain
23
The Netherlands
10
Mexico
10
China
8
India
6
Singapore
5
Vietnam
5
Argentina
4
Finland
4
Hungary
4
New Zealand
4
Czechia
3
Türkiye
3
Uganda
3
Sweden
3
South Africa
3
Poland
2
Italy
2
Sri Lanka
2
Japan
1
Burundi
1
Ireland
1
Portugal
1
South Korea
1
Kenya
1
Bahamas
1
Israel
444 institutions total, 444 with coordinates
Open Access Status
Gold OA
Green OA
Hybrid OA
Closed Access
Bronze OA
Unknown
Research Topics
Genomics and Phylogenetic Studies
37
Cell Image Analysis Techniques
22
Single-cell and spatial transcriptomics
21
Genetic diversity and population structure
17
Scientific Computing and Data Management
15
Functional Brain Connectivity Studies
12
Advanced MRI Techniques and Applications
10
Advanced Neuroimaging Techniques and Applications
10
Evolution and Paleontology Studies
9
Other
43
Publication Venues
Zenodo (CERN European Organization for Nuclear Research)
26
Bioinformatics
10
Nature Methods
10
Systematic Biology
8
Molecular Biology and Evolution
7
PLoS Computational Biology
6
Nature Biotechnology
5
Other
30