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Bart Broere
Gökçen Eraslan
Francisco Pina-Martins
Lluís Revilla
Dario Strbenac
Community Health
Community Size
1,112
Authors
97
Active Authors
last 2 years
66
Multi-Pub Authors
2+ publications
3%
Top Author Share
top 10 authors
2,320
Contributors
7
Active Contributors
854
Core Contributors
199
Multi-Repo
2+ repos
6,883
Participants
Publications
Avg Authors/Pub7.3
International57 (35%)
Cross-Institutional129 (79.1%)
Network Density0.0355
Collaboration Bridges
L
Laurent GattoS
Sean DavisL
Levi WaldronB
Benjamin Haibe‐KainsJ
Joel S. ParkerDomain Connectors
S
Susan Holmes4 fields, 8 topicsB
Benjamin J. Callahan4 fields, 8 topicsP
Paul J. McMurdie4 fields, 6 topicsJ
Julio Sáez-Rodríguez3 fields, 11 topicsM
Mark D. Robinson3 fields, 10 topicsRepositories
Avg Contributors/Repo7.5
International Repos0
Cross-Institutional Repos0
Network Density0.1482
Collaboration Bridges
Bart BroereGökçen EraslanFrancisco Pina-MartinsLluís RevillaDario StrbenacDomain Connector Repos
hks5august/cpsm8 fields, 18 topics
seandavi/geoquery6 fields, 14 topics
rformassspectrometry/spectripy5 fields, 6 topics
benjjneb/dada24 fields, 6 topics
lieberinstitute/deconvobuddies3 fields, 5 topics
Publications
Author Concentration3%
Healthy (3+ authors)133/163 (82%)
Solo author10/163 (6%)
At-Risk Publications (3)
| Publication | Author | Year |
|---|---|---|
| Building Predictive Models in <i>R</i> Using the <b>caret</b> Package | Max Kühn | 2008 |
| KEGG: Kyoto Encyclopedia of Genes and Genomes | Minoru Kanehisa | 2000 |
| crmclean/Autotuner: Adding Zenodo | crmclean | 2019 |
Repositories
Portfolio Bus Factor:1
Healthy distribution158/3710 (4%)
Single maintainer213/3710 (6%)
At-Risk Repositories (256)
| Repository | Top % | Core | Active |
|---|---|---|---|
| jimduggan/aimsir17 | 100% | 1 | |
| petrenkokate/cellmentor | 100% | 1 | |
| augere-bioinfo/augere.gsea | 100% | 1 | |
| xyz1396/aerith | 100% | 1 | |
| bioconductor/biocazul | 100% | 1 |
Publications
Publication Trend→
Author Consistency0.98
Avg Years Active/Author1.1
Publications by Year
2019
12
2020
21
2021
7
2022
12
2023
16
2024
14
2025
20
2026
1
Repositories
Commits (52 weeks)294
Commits (12 weeks)52↘
Avg Contributor Consistency0.63
Avg Active Weeks/Contributor9.2
Author Retention
| Year | Total | New | Ret. | Churn |
|---|---|---|---|---|
| 2021 | 46 | 46 | 0 | 158 |
| 2022 | 73 | 73 | 0 | 46 |
| 2023 | 98 | 98 | 0 | 73 |
| 2024 | 50 | 42 | 8 | 90 |
| 2025 | 91 | 89 | 2 | 48 |
| 2026 | 6 | 6 | 0 | 91 |
Overall Retention Rate0.8%
Contributor Retention
New Contributors (12mo)12
Retained6
Churned537
Retention Rate1.1%
Engagement
Citing Community
Citing Authors135,043
Citing Institutions13,418
Citing Topic Breadth
Domains4
Fields26
Subfields235
Topics2,663
Top Citing Fields
Biochemistry, Genetics and Molecular Biology17,618
Medicine10,008
Environmental Science5,602
Agricultural and Biological Sciences5,209
Immunology and Microbiology2,434
Computer Science1,979
Engineering1,440
Neuroscience1,310
Earth and Planetary Sciences1,044
Chemistry844
Top Citing Subfields
Molecular Biology14,279
Genetics3,733
Ecology3,358
Cancer Research2,873
Plant Science2,827
Immunology2,094
Pulmonary and Respiratory Medicine2,042
Oncology1,723
Epidemiology1,387
Physiology1,255
Repository Activity
Issues Opened9,287
Issues Closed6,309
PRs Opened5,904
PRs Reviewed0
Comments22,997
Helpful Reactions3,407
Avg 0.15 reactions/comment
6117 reporters0 reviewers130 triagers63 support
Champions
Most Prolific Authors
N
Niko Beerenwinkel
5 publications
J
Julio Sáez-Rodríguez
5 publications
M
Mark D. Robinson
4 publications
High-Impact Maintainers
fyangf
0 citations, 77,685 stars
kmindspark
0 citations, 77,685 stars
Reed
0 citations, 77,685 stars
Longest Author Careers
M
Mark D. Robinson
18 years (2007-2024)
S
Sean Davis
18 years (2007-2024)
F
Florian Markowetz
14 years (2012-2025)
Longevity Leaders
andreasheger
14 years, 31% consistency
Christian Clauss
4 years, 102% consistency
Joffrey F
7 years, 55% consistency
Community Advocates
theHumanBorch
258 comments, 32 reactions
Tobias Kockmann
264 comments, 23 reactions
Christian Panse
232 comments, 30 reactions
Top People
Top Authors (1000)
| Author | Pubs ▼ | Institutions | Topics | Years |
|---|---|---|---|---|
N Niko Beerenwinkel | 5 | 4 | 8 | 2007-2019 |
J Julio Sáez-Rodríguez | 5 | 8 | 11 | 2015-2023 |
M Mark D. Robinson | 4 | 3 | 10 | 2007-2024 |
B Benjamin J. Callahan | 4 | 3 | 8 | 2016-2019 |
R Rafael A. Irizarry | 3 | 3 | 8 | 2010-2017 |
C Charles M. Perou | 3 | 1 | 8 | 2009-2020 |
Z Zuguang Gu | 3 | 4 | 5 | 2020-2022 |
P Petr V. Nazarov | 3 | 1 | 5 | 2019-2024 |
S Sayed‐Rzgar Hosseini | 3 | 6 | 5 | 2019-2025 |
S Susan Holmes | 3 | 1 | 8 | 2016-2018 |
F Florian Markowetz | 3 | 3 | 7 | 2012-2025 |
J Joel S. Parker | 3 | 2 | 7 | 2009-2020 |
L Leonardo Collado‐Torres | 3 | 3 | 7 | 2016-2025 |
L Louise A. Huuki-Myers | 2 | 5 | 5 | 2025-2025 |
M Marcel Ramos | 2 | 3 | 6 | 2023-2024 |
R Réka Tóth | 2 | 1 | 3 | 2023-2024 |
N Nils Eling | 2 | 2 | 3 | 2020-2024 |
M Maryna Chepeleva | 2 | 2 | 3 | 2023-2024 |
A Antônio Reverter | 2 | 2 | 5 | 2008-2010 |
F Frank E. Harrell | 2 | 0 | 0 | 2003-2009 |
Top Contributors (1000)
| Contributor | Repos | Commits ▼ | Status | Consistency |
|---|---|---|---|---|
 Nitesh Turaga | 309 | 3,396 | Core | 0.22 |
 Dan Tenenbaum | 155 | 3,334 | Core | 0.00 |
 jwokaty | 306 | 2,970 | Core | 0.06 |
 Enio Gjerga | 2 | 2,796 | Core | 0.00 |
 ltla | 36 | 2,368 | Core | 0.00 |
 link-ny | 88 | 2,018 | Core | 0.00 |
 catalyst-project | 1 | 1,946 | Core | 0.00 |
 Jiaming Yuan | 1 | 1,924 | Core | 0.00 |
 Pierrick Roger | 11 | 1,830 | Core | 0.00 |
 Tianqi Chen | 1 | 1,800 | Core | 0.00 |
 Hervé Pagès | 247 | 1,783 | Core | 1.00 |
| Joffrey F | 1 | 1,716 | Core | 0.55 |
 TensorFlower Gardener | 1 | 1,640 | Core | 0.00 |
| andreasheger | 1 | 1,357 | Core | 0.31 |
 Kim | 2 | 1,354 | Core | 0.38 |
 Leland McInnes | 1 | 1,247 | Core | 0.00 |
 Vincent Nijs | 1 | 1,244 | Core | 0.00 |
 Lori (Shepherd) Kern | 115 | 1,232 | Core | 1.00 |
 Sean Corbett | 1 | 1,138 | Core | 0.00 |
 Martin Morgan | 31 | 1,090 | Core | 0.00 |