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shrinath-suresh
Dario Strbenac
Sean Davis
Jeroen Ooms
ltobalina
Community Health
Community Size
1,074
Authors
80
Active Authors
last 2 years
61
Multi-Pub Authors
2+ publications
3.1%
Top Author Share
top 10 authors
1,374
Contributors
19
Active Contributors
596
Core Contributors
126
Multi-Repo
2+ repos
4,986
Participants
Publications
Avg Authors/Pub7.4
International54 (34.6%)
Cross-Institutional123 (78.8%)
Network Density0.0187
Collaboration Bridges
L
Levi WaldronB
Benjamin Haibe‐KainsJ
Joel S. ParkerH
Hai HuJ
Jianjiong GaoDomain Connectors
S
Susan Holmes4 fields, 8 topicsB
Benjamin J. Callahan4 fields, 8 topicsP
Paul J. McMurdie4 fields, 6 topicsJ
Julio Sáez-Rodríguez3 fields, 11 topicsM
Mark D. Robinson3 fields, 10 topicsRepositories
Avg Contributors/Repo6.2
International Repos0
Cross-Institutional Repos0
Network Density0.0398
Collaboration Bridges
shrinath-sureshDario StrbenacSean DavisJeroen OomsltobalinaDomain Connector Repos
hks5august/cpsm8 fields, 18 topics
benjjneb/dada24 fields, 6 topics
lieberinstitute/deconvobuddies3 fields, 5 topics
ghoshlab/cytokernel3 fields, 9 topics
mbojan/alluvial3 fields, 3 topics
Publications
Author Concentration3%
Healthy (3+ authors)129/156 (83%)
Solo author9/156 (6%)
At-Risk Publications (6)
| Publication | Author | Year |
|---|---|---|
| ggalluvial: Layered Grammar for Alluvial Plots | Jason Cory Brunson | 2020 |
| Building Predictive Models in <i>R</i> Using the <b>caret</b> Package | Max Kühn | 2008 |
| rms: Regression Modeling Strategies | Frank E. Harrell | 2009 |
| Hmisc: Harrell Miscellaneous | Frank E. Harrell | 2003 |
| KEGG: Kyoto Encyclopedia of Genes and Genomes | Minoru Kanehisa | 2000 |
Repositories
Portfolio Bus Factor:1
Healthy distribution151/507 (30%)
Single maintainer202/507 (40%)
At-Risk Repositories (10)
| Repository | Top % | Core | Active |
|---|---|---|---|
| qpmnguyen/cbea | 100% | 1 | |
| bioc/alphamissense.v2023.hg19 | 100% | 1 | |
| augere-bioinfo/augere.gsea | 100% | 1 | |
| kokonech/atacinfercnv | 100% | 1 | |
| bioconductor/biocazul | 100% | 1 |
Publications
Publication Trend↗
Author Consistency0.98
Avg Years Active/Author1.1
Publications by Year
2018
14
2019
12
2020
20
2021
7
2022
12
2023
15
2024
12
2025
18
Repositories
Commits (52 weeks)561
Commits (12 weeks)133→
Avg Contributor Consistency0.64
Avg Active Weeks/Contributor11.2
Author Retention
| Year | Total | New | Ret. | Churn |
|---|---|---|---|---|
| 2020 | 147 | 146 | 1 | 90 |
| 2021 | 46 | 46 | 0 | 147 |
| 2022 | 73 | 73 | 0 | 46 |
| 2023 | 88 | 88 | 0 | 73 |
| 2024 | 49 | 45 | 4 | 84 |
| 2025 | 80 | 78 | 2 | 47 |
Overall Retention Rate1.7%
Contributor Retention
New Contributors (12mo)12
Retained10
Churned347
Retention Rate2.8%
Engagement
Citing Community
Citing Authors75,047
Citing Institutions8,524
Citing Topic Breadth
Domains4
Fields26
Subfields212
Topics1,687
Top Citing Fields
Biochemistry, Genetics and Molecular Biology9,863
Medicine4,173
Agricultural and Biological Sciences2,646
Environmental Science2,168
Immunology and Microbiology1,286
Neuroscience543
Engineering456
Computer Science403
Earth and Planetary Sciences402
Chemistry316
Top Citing Subfields
Molecular Biology8,056
Genetics2,296
Ecology1,583
Plant Science1,552
Cancer Research1,502
Immunology1,126
Oncology785
Physiology675
Pulmonary and Respiratory Medicine660
Cell Biology633
Repository Activity
Issues Opened7,531
Issues Closed4,851
PRs Opened4,342
PRs Reviewed0
Comments18,224
Helpful Reactions2,438
Avg 0.13 reactions/comment
4647 reporters0 reviewers110 triagers47 support
Champions
Most Prolific Authors
N
Niko Beerenwinkel
5 publications
J
Julio Sáez-Rodríguez
5 publications
B
Benjamin J. Callahan
4 publications
High-Impact Maintainers
Yeqing Li
0 citations, 77,685 stars
derekjchow
0 citations, 77,685 stars
Toby Boyd
0 citations, 77,685 stars
Longest Author Careers
M
Mark D. Robinson
18 years (2007-2024)
F
Florian Markowetz
14 years (2012-2025)
N
Niko Beerenwinkel
13 years (2007-2019)
Longevity Leaders
andreasheger
14 years, 31% consistency
Chen Sun
6 years, 60% consistency
John Marshall
8 years, 34% consistency
Community Advocates
frederickhuanglin
193 comments, 43 reactions
Robert Castelo
167 comments, 17 reactions
Edward Zhao
152 comments, 21 reactions
Top People
Top Authors (1000)
| Author | Pubs ▼ | Institutions | Topics | Years |
|---|---|---|---|---|
N Niko Beerenwinkel | 5 | 4 | 8 | 2007-2019 |
J Julio Sáez-Rodríguez | 5 | 8 | 11 | 2015-2023 |
M Mark D. Robinson | 4 | 3 | 10 | 2007-2024 |
B Benjamin J. Callahan | 4 | 3 | 8 | 2016-2019 |
C Charles M. Perou | 3 | 1 | 8 | 2009-2020 |
R Rafael A. Irizarry | 3 | 3 | 8 | 2010-2017 |
S Susan Holmes | 3 | 1 | 8 | 2016-2018 |
F Florian Markowetz | 3 | 3 | 7 | 2012-2025 |
Z Zuguang Gu | 3 | 4 | 5 | 2020-2022 |
P Petr V. Nazarov | 3 | 1 | 5 | 2019-2024 |
J Joel S. Parker | 3 | 2 | 7 | 2009-2020 |
S Sayed‐Rzgar Hosseini | 3 | 6 | 5 | 2019-2025 |
L Leonardo Collado‐Torres | 3 | 3 | 7 | 2016-2025 |
C Chris Holmes | 2 | 3 | 6 | 2008-2011 |
M Michael I. Love | 2 | 3 | 5 | 2016-2022 |
B Benjamin Haibe‐Kains | 2 | 6 | 4 | 2013-2015 |
H Hai Hu | 2 | 2 | 4 | 2015-2019 |
J Jonathan Marchini | 2 | 2 | 4 | 2008-2011 |
E Elaine R. Mardis | 2 | 1 | 6 | 2009-2015 |
B Barbara A. Foster | 2 | 1 | 6 | 2023-2023 |
Top Contributors (1000)
| Contributor | Repos | Commits ▼ | Status | Consistency |
|---|---|---|---|---|
 Dan Tenenbaum | 150 | 3,247 | Core | 0.00 |
 Nitesh Turaga | 291 | 3,225 | Core | 0.00 |
 jwokaty | 287 | 2,798 | Core | 0.00 |
 Enio Gjerga | 2 | 2,796 | Core | 0.00 |
 ltla | 36 | 2,368 | Core | 0.00 |
 catalyst-project | 1 | 1,946 | Core | 0.00 |
 Jiaming Yuan | 1 | 1,911 | Core | 0.00 |
 Pierrick Roger | 11 | 1,830 | Core | 0.00 |
 Tianqi Chen | 1 | 1,800 | Core | 0.00 |
 link-ny | 84 | 1,754 | Core | 0.00 |
 Hervé Pagès | 238 | 1,751 | Core | 0.00 |
 TensorFlower Gardener | 1 | 1,640 | Core | 0.00 |
| andreasheger | 1 | 1,357 | Core | 0.31 |
 Leland McInnes | 1 | 1,247 | Core | 0.00 |
 Vincent Nijs | 1 | 1,244 | Core | 0.00 |
 Lori (Shepherd) Kern | 111 | 1,218 | Core | 0.00 |
 Sean Corbett | 1 | 1,138 | Core | 0.00 |
 Martin Morgan | 31 | 1,090 | Core | 0.00 |
 Joshua D. Campbell | 1 | 1,034 | Core | 0.00 |
 Aditya | 1 | 948 | Core | 0.00 |