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Impact Analysis

219,414
Total Citations
29,661
Unique Citing Papers
15
Citing Fields
20
Citing Institutions
259
Linked Publications
9 canonical · 188 mentions · 62 papers
4,747
Papers Depending on Software
203.7M
Package Downloads
1,299
Dependent Packages
6,303
External Users
Non-contributor participants
Publications
Total Citations219,414
Median Citations36
Portfolio FWCI30.47

Citation Trajectory

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2296
12
3068
13
3749
14
4577
15
5681
16
7238
17
9209
18
12395
19
18425
20
24657
21
25851
22
28141
23
33500
24
29182
25
7407
26
Repositories
Paper Connections259
Papers Depending on Software4,747
Package Downloads203.7M
Dependent Packages1,299
Dependent Repos25,749

Adoption Signals

Issues from Users7,537
PRs from Users3,769
External Unique Users6,303
Publications
30.47FWCI (147 papers)

Percentile Distribution

Top 1% (115)Top 10% (25)No data (49)

Citation Distribution

0
27
1-5
26
6-20
27
21-50
29
51-100
19
101-500
28
500+
33

Top Papers

TitleCit. ▼FWCIPctl
limma powers differential expression analyses for RNA-sequencing and microarray studies41,776596.34100th
KEGG: Kyoto Encyclopedia of Genes and Genomes38,56315.57100th
DADA2: High-resolution sample inference from Illumina amplicon data35,072303.14100th
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome22,760908.96100th
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs14,245232.57100th
Building Predictive Models in <i>R</i> Using the <b>caret</b> Package8,9562.77100th
The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups6,300128.95100th
Supervised Risk Predictor of Breast Cancer Based on Intrinsic Subtypes4,811209.55100th
GEOquery: a bridge between the Gene Expression Omnibus (GEO) and BioConductor3,4954.17100th
Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data3,43774.66100th
Publications
Citing Authors135,043
Citing Institutions13,418

Top Citing Institutions

Harvard University(US)
745 citations
Centre National de la Recherche Scientifique(FR)
654 citations
Karolinska Institutet(SE)
605 citations
Chinese Academy of Sciences(CN)
482 citations
University of Cambridge(GB)
434 citations
Stanford University(US)
419 citations

Recent Citing Papers

  • Genome-assisted identification of wheat leaf rust resistance gene Lr.ace-4A/Lr30
    2025cites: BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
  • Risk Stratification of COVID-19 Using Routine Laboratory Tests: A Machine Learning Approach
    2022cites: Building Predictive Models in <i>R</i> Using the <b>caret</b> Package
  • CFIm-mediated alternative polyadenylation remodels cellular signaling and miRNA biogenesis
    2022cites: Visualizing Genomic Data Using Gviz and Bioconductor
  • Integrated multi-omic high-throughput strategies across-species identified potential key diagnostic, prognostic, and therapeutic targets for atherosclerosis under high glucose conditions
    2024cites: GEOquery: a bridge between the Gene Expression Omnibus (GEO) and BioConductor
  • Additional file 6 of Single-cell transcriptomic analysis reveals a novel cell state and switching genes during hepatic stellate cell activation in vitro
    2022cites: KEGG: Kyoto Encyclopedia of Genes and Genomes
Repositories

Software Used By

Harvard University(US)
14 papers
Johns Hopkins University(US)
9 papers
University of Cambridge(GB)
9 papers
Heidelberg University(DE)
8 papers
University of Zurich(CH)
8 papers
University Hospital Heidelberg(DE)
7 papers
SIB Swiss Institute of Bioinformatics(CH)
7 papers
ETH Zurich(CH)
7 papers
University of North Carolina at Chapel Hill(US)
7 papers
Stanford University(US)
6 papers

External User Breakdown

Issue Reporters5,952
Reviewers0
Triagers90
Supporters30
Publications
Citing Domains4
Citing Fields26
Citing Subfields235

Top Citing Fields

Biochemistry, Genetics and Molecular Biology17618
Medicine10008
Environmental Science5602
Agricultural and Biological Sciences5209
Immunology and Microbiology2434
Computer Science1979
Engineering1440
Neuroscience1310
Earth and Planetary Sciences1044
Chemistry844

Top Citing Subfields

Molecular Biology14279
Genetics3733
Ecology3358
Cancer Research2873
Plant Science2827
Immunology2094
Pulmonary and Respiratory Medicine2042
Oncology1723
Epidemiology1387
Physiology1255
Repositories

Software by Research Field

Biochemistry, Genetics and Molecular Biology
150
Computer Science
28
Medicine
27
Engineering
11
Immunology and Microbiology
7
Mathematics
5
Environmental Science
5
Agricultural and Biological Sciences
3
Decision Sciences
3
Neuroscience
2
Psychology
2
Materials Science
2
Chemistry
1
Business, Management and Accounting
1
Energy
1

Countries (33)

713
United States
280
United Kingdom
223
Germany
106
Switzerland
76
Spain
73
Canada
70
France
61
Sweden
52
China
46
Australia
39
South Korea
34
Belgium
34
Finland
24
Norway
24
Italy
19
Greece
14
The Netherlands
12
Denmark
11
Luxembourg
7
Israel
6
India
6
Czechia
4
Hong Kong
3
Russia
3
Austria
2
Thailand
2
Japan
1
Lithuania
1
Poland
1
Croatia
1
Ireland
1
Gambia
1
South Africa

449 institutions total, 449 with coordinates

Open Access Status

189
Gold OA
Green OA
Bronze OA
Hybrid OA
Closed Access
Unknown

Research Topics

Gene expression and cancer classification
65
Bioinformatics and Genomic Networks
43
Single-cell and spatial transcriptomics
39
Cancer Genomics and Diagnostics
29
Genomics and Phylogenetic Studies
18
Molecular Biology Techniques and Applications
18
Genomics and Chromatin Dynamics
17
Cell Image Analysis Techniques
14
RNA Research and Splicing
13
Other
55

Publication Venues

Bioinformatics
30
bioRxiv (Cold Spring Harbor Laboratory)
10
Genome biology
10
NCI BioConductor
10
Zenodo (CERN European Organization for Nuclear Research)
10
BMC Bioinformatics
9
Nucleic Acids Research
8
Other
27