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Impact Analysis

214,855
Total Citations
13,734
Unique Citing Papers
1,687
Citing Fields
8,498
Citing Institutions
209
Linked Publications
1 canonical · 151 mentions · 57 papers
0
Papers Depending on Software
N/A
Package Downloads
No packages linked
N/A
Dependent Packages
4,857
External Users
Non-contributor participants
Publications
Total Citations214,855
Median Citations36
Portfolio FWCI30.27

Citation Trajectory

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2273
12
3045
13
3714
14
4517
15
5614
16
7140
17
9005
18
12129
19
17937
20
24094
21
25287
22
27480
23
32770
24
28610
25
7249
26
Repositories
Paper Connections209
Papers Depending on Software0
Package DownloadsN/A
Dependent PackagesN/A
Dependent ReposN/A

Adoption Signals

Issues from Users6,032
PRs from Users2,731
External Unique Users4,857
Publications
30.27FWCI (140 papers)

Percentile Distribution

Top 1% (110)Top 10% (24)No data (46)

Citation Distribution

0
24
1-5
25
6-20
25
21-50
28
51-100
19
101-500
28
500+
31

Top Papers

TitleCit. ▼FWCIPctl
limma powers differential expression analyses for RNA-sequencing and microarray studies41,776596.34100th
KEGG: Kyoto Encyclopedia of Genes and Genomes38,56315.57100th
DADA2: High-resolution sample inference from Illumina amplicon data35,072303.14100th
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome22,760908.96100th
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs14,245232.57100th
Building Predictive Models in <i>R</i> Using the <b>caret</b> Package8,9562.77100th
The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups6,300128.95100th
Supervised Risk Predictor of Breast Cancer Based on Intrinsic Subtypes4,811209.55100th
Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data3,43774.66100th
Exact sequence variants should replace operational taxonomic units in marker-gene data analysis3,36895.66100th
Publications
Citing Authors75,047
Citing Institutions8,524

Top Citing Institutions

Karolinska Institutet(SE)
480 citations
Harvard University(US)
431 citations
Science for Life Laboratory(SE)
376 citations
Uppsala University(SE)
342 citations
Centre National de la Recherche Scientifique(FR)
336 citations
Chinese Academy of Sciences(CN)
314 citations

Recent Citing Papers

  • Additional file 6 of Single-cell transcriptomic analysis reveals a novel cell state and switching genes during hepatic stellate cell activation in vitro
    2022cites: KEGG: Kyoto Encyclopedia of Genes and Genomes
  • Micro Germline-Restricted Chromosome in Blue Tits: Evidence for Meiotic Functions
    2023cites: BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
  • Development of a novel centrosome-related risk signature to predict prognosis and treatment response in lung adenocarcinoma
    2024cites: limma powers differential expression analyses for RNA-sequencing and microarray studies
  • The Phyllosphere of Nigerian Medicinal Plants Euphorbia lateriflora and Ficus thonningii is inhabited by a specific Microbiota
    2023cites: DADA2: High-resolution sample inference from Illumina amplicon data
  • Additional file 12 of Comparative profiling of single-cell transcriptome reveals heterogeneity of tumor microenvironment between solid and acinar lung adenocarcinoma
    2022cites: KEGG: Kyoto Encyclopedia of Genes and Genomes
Repositories

Software Used By

Harvard University(US)
13 papers
University of Cambridge(GB)
9 papers
Johns Hopkins University(US)
9 papers
Heidelberg University(DE)
8 papers
University of Zurich(CH)
8 papers
ETH Zurich(CH)
7 papers
University Hospital Heidelberg(DE)
7 papers
University of North Carolina at Chapel Hill(US)
7 papers
SIB Swiss Institute of Bioinformatics(CH)
7 papers
University of Oxford(GB)
6 papers

External User Breakdown

Issue Reporters4,567
Reviewers0
Triagers82
Supporters21
Publications
Citing Domains4
Citing Fields26
Citing Subfields212

Top Citing Fields

Biochemistry, Genetics and Molecular Biology9863
Medicine4173
Agricultural and Biological Sciences2646
Environmental Science2168
Immunology and Microbiology1286
Neuroscience543
Engineering456
Computer Science403
Earth and Planetary Sciences402
Chemistry316

Top Citing Subfields

Molecular Biology8056
Genetics2296
Ecology1583
Plant Science1552
Cancer Research1502
Immunology1126
Oncology785
Physiology675
Pulmonary and Respiratory Medicine660
Cell Biology633
Repositories

Software by Research Field

Biochemistry, Genetics and Molecular Biology
140
Medicine
23
Computer Science
20
Engineering
9
Immunology and Microbiology
6
Mathematics
5
Environmental Science
4
Decision Sciences
3
Psychology
2
Materials Science
2
Neuroscience
2
Agricultural and Biological Sciences
2
Health Professions
1
Chemistry
1
Energy
1

Countries (31)

628
United States
235
United Kingdom
199
Germany
88
Switzerland
73
Canada
63
France
44
China
41
Australia
41
Spain
39
South Korea
26
Belgium
25
Sweden
22
Finland
16
Italy
14
The Netherlands
10
Denmark
8
Greece
7
Norway
7
Israel
6
India
5
Luxembourg
5
Czechia
4
Hong Kong
3
Russia
3
Austria
2
Thailand
2
Japan
1
Lithuania
1
Poland
1
Croatia
1
Gambia

394 institutions total, 394 with coordinates

Open Access Status

180
Gold OA
Green OA
Bronze OA
Hybrid OA
Closed Access
Unknown

Research Topics

Gene expression and cancer classification
62
Bioinformatics and Genomic Networks
41
Single-cell and spatial transcriptomics
37
Cancer Genomics and Diagnostics
29
Molecular Biology Techniques and Applications
18
Genomics and Phylogenetic Studies
17
Genomics and Chromatin Dynamics
15
RNA Research and Splicing
13
RNA and protein synthesis mechanisms
12
Other
54

Publication Venues

Bioinformatics
29
bioRxiv (Cold Spring Harbor Laboratory)
10
Genome biology
10
NCI BioConductor
10
Zenodo (CERN European Organization for Nuclear Research)
8
Nucleic Acids Research
8
BMC Bioinformatics
8
Other
26