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Dependencies

9
Software Dependencies (Direct)
11
Software Dependencies (Transitive)
4,315
Software Mentioned in Papers
4,107
Software in Cited Papers
17,841
Declared Dependencies
From manifests
973
Discovered (Hidden)
Symbol + wrapper analysis
198
System Libraries
0
With Known Vulns
None detected
What Software Does This Research Build On?

Via Cited DOIs (depth 1)

Repos whose canonical DOI paper is directly cited by seed papers.

RepositorySeed Papers ▼
matplotlib/matplotlib18
allenai/allennlp8
sympy/sympy3
optuna/optuna3
scikit-image/scikit-image2
materialsproject/pymatgen2
julialang/julia1
sunpy/sunpy1
arviz-devs/arviz1

Software Mentions in Seed Papers

SoftwarePapers ▼Mapped
code70unmapped
latex57unmapped
linux49unmapped
matlab45unmapped
windows42unmapped
pytorch37mapped
python37mapped
tensorflow33mapped
r32unmapped
scripts32unmapped
script32unmapped
github21mapped
google19unmapped
java19unmapped
c + +18unmapped
bioconductor18unmapped
ensembl16unmapped
c16unmapped
blast16unmapped
excel15unmapped
What Software Do Referenced Papers Use?

Software mentioned in papers that seed papers reference.

SoftwareRef. Papers ▼Linked
latex54unlinked
code53unlinked
script39unlinked
scripts38unlinked
linux38unlinked
matlab35unlinked
r32unlinked
windows30unlinked
python29linked
tensorflow29linked
ensembl26unlinked
bioconductor24unlinked
pytorch23linked
github20linked
imagej19linked
seurat19unlinked
matplotlib16linked
scipy15linked
cell ranger15unlinked
google15unlinked
Ecosystem & Depth

Ecosystem Distribution

pypi
45.6K(65%)
actions
11.6K(16%)
conda
8.6K(12%)
npm
2.5K(4%)
rubygems
731(1%)
docker
689(1%)
maven
269(0%)
cargo
168(0%)
cran
133(0%)
Other
345(0%)

Depth Distribution

Direct (layer 1)
17.9K(23%)
Transitive (layer 2)
17.7K(23%)
Transitive (layer 3)
20.2K(26%)
Deep (layer 4+)
15.1K(20%)
Unknown
6.0K(8%)
Dependency Types & Detection

Dependency Types

runtime
74.5K(97%)
dev
1.4K(2%)
build
610(1%)
test
434(1%)

Detection Methods

manifest_parsing
75.9K(99%)
symbol_analysis
973(1%)

75,941 declared, 973 discovered

75941
Declared (75941)Discovered (973)

Wrapper-Detected Pairs

Language packages that wrap underlying system libraries.

PackageEcosystemSystem LibraryConfidence ▼
onnxruntime-cannpypiacl_op_compiler100%
geoai-rasteriopypiaec100%
h5pypypiaec100%
rasteriopypiaec100%
cupy-rocm-7-0pypiamdhip100%
vllm-rocmpypiamdhip100%
cupy-rocm-4-2pypiamdhip100%
cupy-rocm-4-0pypiamdhip100%
cupy-rocm-5-0pypiamdhip100%
cupy-rocm-4-3pypiamdhip100%
onnxruntime-cannpypiascendcl100%
tensorflow-io-nightlypypiavcodec100%
tensorflow-iopypiavcodec100%
tensorflow-iopypiavformat100%
tensorflow-io-nightlypypiavformat100%
pillowpypiavif100%
tensorflow-iopypiavutil100%
tensorflow-io-nightlypypiavutil100%
rasteriopypiblosc100%
geoai-rasteriopypiblosc100%

Symbol-Analysis Discoveries

Undeclared dependencies found via binary/symbol analysis.

TargetTypeConfidence ▼Sources
glibc(runtime)library100%127
gcc(runtime)library100%119
libstdcxx(runtime)library100%118
openblas(linear_algebra)library100%43
cuda(gpu)library100%32
openmp(runtime)library100%31
cusparse(gpu)library100%26
curand(gpu)library100%26
nvrtc(gpu)library100%23
cufft(gpu)library100%20
cudnn(gpu)library100%20
cusolver(gpu)library100%19
nccl(gpu)library100%18
nvToolsExt(gpu)library100%17
cutensor(gpu)library100%14
c(other)library100%13
torch(other)library100%13
c10_cuda(other)library100%11
tbb(threading)library100%10
zlib(compression)library100%10

Transitive Chain Depth

17,854
Direct (layer 1)
17,736
Transitive (layer 2)
20,212
Transitive (layer 3)
15,078
Deep (layer 4+)
6,034
Unknown
Security Advisories

No security advisories found for portfolio dependencies.

Package Health

Health Score Distribution

Not Scored
38(100%)

System Library Health

NameCategoryHealthFundedDeps ▼
glibcruntime-unfunded256
gccruntime-unfunded245
libstdcxxruntime-unfunded244
openblaslinear_algebra-unfunded164
zlibcompression-unfunded132
gfortranruntime-unfunded125
quadmathmath-unfunded123
libpngimage-unfunded90
libjpeg-turboimage-unfunded89
sharpyuvother-unfunded88
libwebpimage-unfunded88
openjpother-unfunded86
zstdcompression-unfunded86
xzcompression-unfunded86
libtiffimage-unfunded86
pcre2other-unfunded85
boringsslcrypto-unfunded85
opensslcrypto-unfunded85
curlnetworking-unfunded85
Xauother-unfunded84

Most widely used packages across portfolio repositories.

PackageEcosystemTypeDetectionHealthAdvisoriesUsed By ▼
numpypypidirectdeclared-0451 repos
actions/checkoutactionsdirectdeclared-0362 repos
torchpypidirectdeclared-0312 repos
matplotlibpypidirectdeclared-0290 repos
actions/setup-pythonactionsdirectdeclared-0289 repos
scipypypidirectdeclared-0288 repos
pandaspypidirectdeclared-0281 repos
tqdmpypidirectdeclared-0268 repos
pillowpypidirectdeclared-0263 repos
pyyamlpypidirectdeclared-0240 repos
pytestpypidirectdeclared-0231 repos
requestspypidirectdeclared-0220 repos
packagingpypidirectdeclared-0212 repos
sphinxpypidirectdeclared-0204 repos
python-dateutilpypidirectdeclared-0195 repos
typing-extensionspypidirectdeclared-0195 repos
urllib3pypidirectdeclared-0195 repos
jinja2pypidirectdeclared-0194 repos
clickpypidirectdeclared-0188 repos
psutilpypidirectdeclared-0182 repos

Computed 3/27/2026, 8:28:54 PM across 2564 repositories