search

Active

declared in 0.1.0

Search the Reactome biological pathway database by keyword across all object types (Pathway, Reaction, Protein, Complex, etc.); returns stable IDs and display names grouped by type.

Parameters schema

{
  "type": "object",
  "examples": [
    {
      "query": "apoptosis"
    },
    {
      "query": "TP53",
      "types": "Protein,Pathway",
      "cluster": true
    }
  ],
  "required": [
    "query"
  ],
  "properties": {
    "query": {
      "type": "string"
    },
    "types": {
      "type": "string",
      "description": "Comma-sep: Pathway,Reaction,Protein,Complex,…"
    },
    "cluster": {
      "type": "boolean",
      "description": "Group results by type (default true)."
    }
  }
}

What this tool wraps· 1 endpoint

min confidence0.70 0.50

Data resourceReactome Content Service
Reactome · science
name mention0.85

Parent server

Reactome

https://github.com/pipeworx-io/mcp-reactome

1/7 registries

View full server →