protease_digestion
ActiveTool of com.seqbench/workbench
declared in 1.1.0
In-silico protease/chemical digestion: cleave a protein and report each peptide's position, length and neutral mass.
Parameters schema
{
"type": "object",
"required": [
"sequence"
],
"properties": {
"maxMass": {
"type": "number",
"description": "Optional upper bound on neutral monoisotopic mass (Da)."
},
"minMass": {
"type": "number",
"description": "Optional lower bound on neutral monoisotopic mass (Da)."
},
"protease": {
"enum": [
"trypsin",
"lysc",
"argc",
"chymotrypsin",
"gluc",
"aspn",
"cnbr"
],
"type": "string",
"default": "trypsin",
"description": "Protease or chemical cleavage agent."
},
"sequence": {
"type": "string",
"description": "Protein sequence (one-letter amino-acid codes; non-AA characters ignored)."
},
"maxPeptides": {
"type": "integer",
"default": 2000,
"description": "Cap on the number of returned peptides."
},
"missedCleavages": {
"enum": [
0,
1,
2
],
"type": "integer",
"default": 0,
"description": "Allowed missed internal cleavages (0–2)."
}
},
"additionalProperties": false
}No endpoints wrapped at confidence ≥ 0.70.
Parent server
com.seqbench/workbench
1/7 registries