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PRSM

protease_digestion

Active

Tool of com.seqbench/workbench

declared in 1.1.0

In-silico protease/chemical digestion: cleave a protein and report each peptide's position, length and neutral mass.

Parameters schema

{
  "type": "object",
  "required": [
    "sequence"
  ],
  "properties": {
    "maxMass": {
      "type": "number",
      "description": "Optional upper bound on neutral monoisotopic mass (Da)."
    },
    "minMass": {
      "type": "number",
      "description": "Optional lower bound on neutral monoisotopic mass (Da)."
    },
    "protease": {
      "enum": [
        "trypsin",
        "lysc",
        "argc",
        "chymotrypsin",
        "gluc",
        "aspn",
        "cnbr"
      ],
      "type": "string",
      "default": "trypsin",
      "description": "Protease or chemical cleavage agent."
    },
    "sequence": {
      "type": "string",
      "description": "Protein sequence (one-letter amino-acid codes; non-AA characters ignored)."
    },
    "maxPeptides": {
      "type": "integer",
      "default": 2000,
      "description": "Cap on the number of returned peptides."
    },
    "missedCleavages": {
      "enum": [
        0,
        1,
        2
      ],
      "type": "integer",
      "default": 0,
      "description": "Allowed missed internal cleavages (0–2)."
    }
  },
  "additionalProperties": false
}

What this tool wraps· 0 endpoints

min confidence0.700.50

No endpoints wrapped at confidence ≥ 0.70.

Parent server

com.seqbench/workbench

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