search_pathways

Active

declared in 0.1.0

Search WikiPathways (open community pathway database) for biological pathways by name. Pathways map genes/proteins/metabolites in processes like glycolysis, apoptosis, or signaling. Optionally restrict to one organism by Latin or common name. Keyless. Complements KEGG/Reactome.

Parameters schema

{
  "type": "object",
  "required": [
    "query"
  ],
  "properties": {
    "limit": {
      "type": "number",
      "description": "Max results (default 25, max 100)."
    },
    "query": {
      "type": "string",
      "description": "Text to match in the pathway name (case-insensitive), e.g. \"glycolysis\", \"apoptosis\"."
    },
    "organism": {
      "type": "string",
      "description": "Optional. Restrict to an organism by Latin or common name, e.g. \"Homo sapiens\" or \"human\"."
    }
  }
}

What this tool wraps· 1 endpoint

min confidence0.70 0.50

Data resourceReactome Content Service
Reactome · science
name mention0.70

Parent server

Wikipathways

https://github.com/pipeworx-io/mcp-wikipathways

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