characterize_sequence

Active

declared in 1.1.0

One-paste 'tell me everything': auto-detects DNA/RNA/protein, then reports composition, ORFs, single-cutter enzymes, end primers or protein properties, plus a BLAST link.

Parameters schema

{
  "type": "object",
  "required": [
    "sequence"
  ],
  "properties": {
    "maxOrfs": {
      "type": "integer",
      "default": 8,
      "description": "Maximum number of ORFs to return, longest first."
    },
    "minOrfAa": {
      "type": "integer",
      "default": 40,
      "description": "Minimum ORF length in amino acids (nucleotide input only)."
    },
    "sequence": {
      "type": "string",
      "description": "Nucleotide sequence (raw or FASTA; IUPAC accepted)."
    },
    "endPrimerLength": {
      "type": "integer",
      "default": 20,
      "description": "Length of the naive end primers taken from each end."
    }
  },
  "additionalProperties": false
}

What this tool wraps· 0 endpoints

min confidence0.70 0.50

No endpoints wrapped at confidence ≥ 0.70.

Parent server

com.seqbench/workbench

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