codon_optimize

Active

declared in 1.1.0

Codon-optimise a protein (or coding DNA) for an expression host by picking the most-frequent codon per residue.

Parameters schema

{
  "type": "object",
  "required": [
    "protein"
  ],
  "properties": {
    "protein": {
      "type": "string",
      "description": "Protein sequence (one-letter codes). Coding DNA/RNA is accepted and translated (frame +1) first."
    },
    "organism": {
      "enum": [
        "ecoli",
        "human",
        "yeast",
        "cho",
        "pichia",
        "insect",
        "arabidopsis",
        "zebrafish"
      ],
      "type": "string",
      "default": "ecoli"
    }
  },
  "additionalProperties": false
}

What this tool wraps· 0 endpoints

min confidence0.70 0.50

No endpoints wrapped at confidence ≥ 0.50.

Parent server

com.seqbench/workbench

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