variant_comparator

Active

declared in 1.1.0

Align a query to a reference and call variants (substitutions, insertions, deletions) in HGVS g. notation, with optional coding effects.

Parameters schema

{
  "type": "object",
  "required": [
    "reference",
    "query"
  ],
  "properties": {
    "query": {
      "type": "string",
      "description": "Query / variant sequence (raw or FASTA)."
    },
    "coding": {
      "type": "boolean",
      "default": false,
      "description": "Treat as a coding sequence and report amino-acid effects."
    },
    "reference": {
      "type": "string",
      "description": "Reference / wild-type sequence (raw or FASTA)."
    },
    "frameStart": {
      "type": "integer",
      "default": 1,
      "description": "1-based reading-frame start (used when coding is true)."
    }
  },
  "additionalProperties": false
}

What this tool wraps· 0 endpoints

min confidence0.70 0.50

No endpoints wrapped at confidence ≥ 0.70.

Parent server

com.seqbench/workbench

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