sequence_fetch

Active

declared in 1.1.0

Fetch a public DNA/protein record by accession from NCBI Nucleotide, NCBI Protein, UniProt, or Ensembl (e.g. NM_000546, NP_000537, P04637, ENSG00000141510). Only the accession is sent upstream. Use sequence_search first if you only know a gene/organism name, not an accession. For an Ensembl transcript ID this returns spliced cDNA; for a gene ID it returns the full genomic locus (introns included) — Ensembl's own default for each ID type.

Parameters schema

{
  "type": "object",
  "required": [
    "accession"
  ],
  "properties": {
    "db": {
      "enum": [
        "auto",
        "nucleotide",
        "protein",
        "uniprot",
        "ensembl"
      ],
      "type": "string",
      "default": "auto",
      "description": "Database to query; auto-detects from the accession format."
    },
    "format": {
      "enum": [
        "fasta",
        "genbank"
      ],
      "type": "string",
      "default": "fasta",
      "description": "Output format (GenBank is only available for NCBI accessions — UniProt and Ensembl are FASTA-only)."
    },
    "accession": {
      "type": "string",
      "description": "GenBank/RefSeq accession (e.g. NM_000546), UniProtKB accession (e.g. P04637), or Ensembl stable ID (e.g. ENSG00000141510, ENST00000335137)."
    }
  },
  "additionalProperties": false
}

What this tool wraps· 2 endpoints

min confidence0.70 0.50

Parent server

com.seqbench/workbench

1/7 registries

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