get_molecules

Active

Tool of Pdbe

declared in 0.1.0

PDBe (EBI): list the molecules/entities in a PDB structure — proteins, nucleic acids, and ligands, each with entity_id, molecule_type, name, and chain length. Keyless. Pass a 4-char PDB id like "1cbs".

Parameters schema

{
  "type": "object",
  "required": [
    "pdb_id"
  ],
  "properties": {
    "pdb_id": {
      "type": "string",
      "description": "A 4-char PDB id, e.g. \"1cbs\"."
    }
  }
}

What this tool wraps· 1 endpoint

min confidence0.70 0.50

Data resourceRCSB PDB Data API
RCSB · science
schema key0.85

Parent server

Pdbe

https://github.com/pipeworx-io/mcp-pdbe

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