codon_adaptation_index

Parameters schema

{
  "type": "object",
  "required": [
    "sequence"
  ],
  "properties": {
    "organism": {
      "enum": [
        "ecoli",
        "human",
        "yeast",
        "cho",
        "pichia",
        "insect",
        "arabidopsis",
        "zebrafish"
      ],
      "type": "string",
      "default": "ecoli"
    },
    "sequence": {
      "type": "string",
      "description": "Coding sequence (DNA/RNA; should start in-frame at ATG)."
    },
    "frameStart": {
      "type": "integer",
      "default": 1,
      "description": "1-based position to start reading codons."
    },
    "rareThreshold": {
      "type": "number",
      "default": 0.1,
      "description": "Relative adaptiveness (w) below this flags a codon as rare."
    }
  },
  "additionalProperties": false
}

No endpoints wrapped at confidence ≥ 0.70.

Parent server