assembly

Active

declared in 0.1.0

"Biological assembly of [pdb_id]" / "functional oligomer for [PDB entry]" — fetch a biological assembly record (the functional oligomeric unit, which often differs from the crystallographic asymmetric unit). Use when you need the actual functional form of a protein (dimer / tetramer / etc.) rather than the crystal contents.

Parameters schema

{
  "type": "object",
  "examples": [
    {
      "pdb_id": "1abc"
    },
    {
      "pdb_id": "1abc",
      "assembly_id": "2"
    }
  ],
  "required": [
    "pdb_id"
  ],
  "properties": {
    "pdb_id": {
      "type": "string"
    },
    "assembly_id": {
      "type": "string"
    }
  }
}

What this tool wraps· 1 endpoint

min confidence0.70 0.50

Data resourceRCSB PDB Data API
RCSB · science
schema key0.85

Parent server

mcp-rcsb-pdb

https://github.com/pipeworx-io/mcp-rcsb-pdb

2/7 registries

View full server →