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PRSM

pathways_for_entity

Active

Tool of Reactome

declared in 0.1.0

Pathways containing an entity, looked up by external resource id (e.g. UniProt accession).

Parameters schema

{
  "type": "object",
  "examples": [
    {
      "entity_id": "P04637"
    },
    {
      "species": "9606",
      "resource": "ChEBI",
      "entity_id": "CHEBI:15377"
    }
  ],
  "required": [
    "entity_id"
  ],
  "properties": {
    "species": {
      "type": "string",
      "description": "NCBI taxonomy id as a string (default \"9606\" — human)."
    },
    "resource": {
      "type": "string",
      "description": "UniProt | ChEBI | Ensembl | NCBI | GeneCards | … (default UniProt)"
    },
    "entity_id": {
      "type": "string",
      "description": "Identifier within the resource, e.g. \"P04637\" for TP53."
    }
  }
}

What this tool wraps· 2 endpoints

min confidence0.700.50

Parent server

Reactome

https://github.com/pipeworx-io/mcp-reactome

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