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PRSM

motif_finder

Active

Tool of com.seqbench/workbench

declared in 1.1.0

Find (overlapping) occurrences of an IUPAC motif on either strand, allowing mismatches.

Parameters schema

{
  "type": "object",
  "required": [
    "sequence",
    "motif"
  ],
  "properties": {
    "motif": {
      "type": "string",
      "description": "Query motif; IUPAC ambiguity codes (R Y S W K M B D H V N) allowed."
    },
    "sequence": {
      "type": "string",
      "description": "Nucleotide sequence (raw or FASTA; IUPAC accepted)."
    },
    "maxMismatches": {
      "type": "integer",
      "default": 0,
      "description": "Maximum allowed mismatches per match."
    },
    "searchReverseStrand": {
      "type": "boolean",
      "default": true,
      "description": "Also search the reverse strand."
    }
  },
  "additionalProperties": false
}

What this tool wraps· 0 endpoints

min confidence0.700.50

No endpoints wrapped at confidence ≥ 0.70.

Parent server

com.seqbench/workbench

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motif_finder — com.seqbench/workbench — PRSM MCP