virtual_gel

Active

declared in 1.1.0

Predict restriction-digest fragment sizes and their gel migration positions against a chosen DNA ladder.

Parameters schema

{
  "type": "object",
  "required": [
    "sequence"
  ],
  "properties": {
    "ladder": {
      "enum": [
        "1 kb",
        "1 kb Plus",
        "100 bp"
      ],
      "type": "string",
      "default": "1 kb",
      "description": "DNA ladder to plot alongside the sample lane."
    },
    "enzymes": {
      "type": "array",
      "items": {
        "type": "string"
      },
      "description": "Enzyme names to digest with."
    },
    "circular": {
      "type": "boolean",
      "default": false,
      "description": "Treat the sequence as circular (plasmid)."
    },
    "sequence": {
      "type": "string",
      "description": "Nucleotide sequence (raw or FASTA; IUPAC accepted)."
    }
  },
  "additionalProperties": false
}

What this tool wraps· 0 endpoints

min confidence0.70 0.50

No endpoints wrapped at confidence ≥ 0.70.

Parent server

com.seqbench/workbench

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