volcano_plot_data
ActiveTool of com.seqbench/workbench
declared in 1.1.0
Validate a differential-expression table (gene, log2 fold-change, p-value/FDR) and compute -log10(p) plus up/down/non-significant counts at conventional default thresholds (|log2FC|>=1, p<=0.05), for the Volcano Plot visualization. Invalid rows (non-finite log2FC, or p-value outside (0,1]) are dropped and reported rather than failing the whole batch.
Parameters schema
{
"type": "object",
"required": [
"rows"
],
"properties": {
"rows": {
"type": "array",
"items": {
"type": "object",
"required": [
"gene",
"log2fc",
"pvalue"
],
"properties": {
"gene": {
"type": "string",
"description": "Gene name/id."
},
"log2fc": {
"type": "number",
"description": "log2 fold-change."
},
"pvalue": {
"type": "number",
"description": "p-value, or an adjusted/FDR value — whichever column you want thresholded on. Must be in (0, 1]."
}
}
},
"description": "Differential expression rows, one per gene."
}
},
"additionalProperties": false
}No endpoints wrapped at confidence ≥ 0.50.
Parent server
com.seqbench/workbench
1/7 registries