sequence_search

Active

declared in 1.1.0

Resolve a gene/organism name — or a raw NCBI search term — to candidate accessions, instead of guessing one. Returns up to maxResults hits (accession, title, organism); pass the accession you want to sequence_fetch.

Parameters schema

{
  "type": "object",
  "required": [],
  "properties": {
    "db": {
      "enum": [
        "nucleotide",
        "protein"
      ],
      "type": "string",
      "default": "nucleotide"
    },
    "gene": {
      "type": "string",
      "description": "Gene symbol/name, e.g. \"BRCA1\". Combined with organism (if given) into a search term."
    },
    "term": {
      "type": "string",
      "description": "Raw NCBI search term (advanced) — overrides gene/organism when given, e.g. \"BRCA1[gene] AND Homo sapiens[orgn]\"."
    },
    "organism": {
      "type": "string",
      "description": "Organism name, e.g. \"Homo sapiens\". Optional; narrows the gene search."
    },
    "maxResults": {
      "type": "integer",
      "default": 5,
      "description": "Up to 20."
    }
  },
  "additionalProperties": false
}

What this tool wraps· 0 endpoints

min confidence0.70 0.50

No endpoints wrapped at confidence ≥ 0.50.

Parent server

com.seqbench/workbench

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