plasmid_deep_annotate

Active

declared in 1.1.0

Annotate a plasmid against pLannotate's open-source feature library — a much larger signature set (GenoLIB parts + Swiss-Prot, cross-referenced against ~195k Addgene-deposited plasmids) than plasmid_annotate's built-in curated list. Requires the optional pLannotate sidecar to be deployed and configured; throws a clear internal_error explaining how to set it up if it isn't.

Parameters schema

{
  "type": "object",
  "required": [
    "sequence"
  ],
  "properties": {
    "circular": {
      "type": "boolean",
      "default": true,
      "description": "Treat the sequence as a circular plasmid (vs. linear)."
    },
    "sequence": {
      "type": "string",
      "description": "Nucleotide sequence (raw or FASTA; IUPAC accepted)."
    }
  },
  "additionalProperties": false
}

What this tool wraps· 0 endpoints

min confidence0.70 0.50

No endpoints wrapped at confidence ≥ 0.70.

Parent server

com.seqbench/workbench

1/7 registries

View full server →