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id_map_submit

Active

Tool of com.seqbench/workbench

declared in 1.1.0

Submit up to 1000 ids to UniProt's ID mapping service for a single confirmed-safe hop (e.g. Gene_Name -> UniProtKB-Swiss-Prot, or UniProtKB_AC-ID -> Ensembl/GeneID/RefSeq_Protein/Gene_Name). Returns a jobId immediately — poll it with id_map_poll.

Parameters schema

{
  "type": "object",
  "required": [
    "ids",
    "from",
    "to"
  ],
  "properties": {
    "to": {
      "type": "string",
      "description": "Target id type. Supported single hops: Gene_Name/Ensembl/GeneID/RefSeq_Protein -> \"UniProtKB-Swiss-Prot\" (the only direct target for these), or \"UniProtKB_AC-ID\" -> Ensembl/GeneID/RefSeq_Protein/Gene_Name. Any other pair is rejected — chain two of these hops instead."
    },
    "ids": {
      "type": "array",
      "items": {
        "type": "string"
      },
      "description": "The ids to map, up to 1000 (e.g. gene symbols, UniProt accessions, Ensembl gene IDs, Entrez GeneIDs, or RefSeq protein accessions, depending on \"from\")."
    },
    "from": {
      "type": "string",
      "description": "Source id type: \"Gene_Name\", \"Ensembl\", \"GeneID\", \"RefSeq_Protein\", or \"UniProtKB_AC-ID\". UniProt's mapping graph is hub-and-spoke — see the \"to\" note."
    },
    "taxId": {
      "type": "string",
      "description": "NCBI taxonomy id to disambiguate a gene symbol (only used when from=\"Gene_Name\"). Defaults to human (9606) if omitted."
    }
  },
  "additionalProperties": false
}

What this tool wraps· 2 endpoints

min confidence0.700.50

Parent server

com.seqbench/workbench

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id_map_submit — com.seqbench/workbench — PRSM MCP