You're viewing a demo portfolio
Want to try it with your own data?
Add up to 10,000 DOIs or GitHub URLs at a time, bringing them and their related entities into the graph. Build portfolios and run queries across them.
Join the waitlistPRSM is built and maintained by one person. The platform works today, but opening it up will be slow and deliberate. If you want to help shape this infrastructure, or speed things up, let's talk.
com.seqbench/workbench
Hosted DNA/RNA/protein tools: primers, oligos, PCR, cloning, CRISPR, alignment, batch & pipelines.
biocontext
Not listed
glama
Not listed
mcp.so
Not listed
nerq
Not listed
pulsemcp
Not listed
smithery
Not listed
Look up a UniProt accession in the AlphaFold Protein Structure Database (CC-BY 4.0). Returns confidence, model version and structure file URLs, or {found:false} when no prediction exists for that accession.
Design antisense-oligonucleotide (ASO) gapmers against an mRNA target: scans candidate sites, builds the antisense oligo in the standard 5-10-5 architecture (chemically-modified wings, central DNA gap for RNase H1, phosphorothioate backbone), and screens each for known liabilities (G-quadruplex motifs, CpG immunostimulation, self-complementarity, GC extremes). No transcriptome-wide off-target search.
Design cytosine (CBE, C→T) or adenine (ABE, A→G) base-editing gRNAs for an SpCas9 target: for each NGG gRNA it reports every editable base inside the editor's activity window, flags bystander edits (more than one editable base in the window), and — with a CDS reading frame — classifies each edit's amino-acid consequence (silent / missense / nonsense / stop-loss). Bystander-free guides are ranked first. Handles both strands (a C→T on the protospacer of a reverse-strand guide is reported as the forward-strand G→A).
No endpoints wrapped at confidence ≥ 0.9.
No matched repository in PRSM yet — maintainer attribution unavailable.
Run one SeqBench tool over many records at once. `input` is multi-FASTA or one sequence per line; `tool` is any batchable tool name; `args` are shared arguments. Returns a table of per-record results.